Good day, Ma'am! Here are our answers:
1. The Hedgehog (Hh) gene was first identified in Drosophila melanogaster as the one responsible in the establishment of their body plan (i.e., segment polarity). It was also eventually found to be expressed along the midline of chordates (Sato et al., 2009). In chordates, the Hh proteins from the notochord are responsible in signaling the neural plate for floor plate induction and neural tube patterning. In hemichordates, Miyamoto & Wada (2013) found that the stomochord and the dorsal endoderm of the buccal tube release Hh molecules to which the collar cord and the mesoderm have the potential to respond for patterning.
2. The study did not draw any conclusion regarding the homology between the notochord and the stomochord. It was only mentioned that they have a similar genetic regulatory machinery for hydrostatic skeleton and the patterning of the nervous system. However, their findings suggest that the stomochord, together with the endoderm, is responsible in patterning the collar cord—much like how the notochord directs the formation of the neural tube.
Thank you!
References:
Miyamoto, N. & Wada, H. (2013). Hemichordate neurulation and the origin of the neural tube. Nature Communications, 4(2713). https://doi.org/10.1038/ncomms3713
Sato, A., White-Cooper, H., Doggett, K., & Holland, P. W. H. (2009). Degenerate evolution of the hedgehog gene in a hemichordate lineage. Proc Natl Acad Sci USA, 106(18), 7491–7494. https://doi.org/10.1073/pnas.0810430106